%%%%%%%%;
% This file lists the gene- and perturbagen-indices of;
% /data/rangan/dir_bcc/dir_CMAP/dir_reframe/filtered_modzs_signatures_24h_trtcp_A549_1uM.h5 ;
% in their order of importance, ;
% with the most important indices listed first (i.e., higher) in the file. ;
%%%%%%%%;
% First we list 201 of the gene-indices. ;
% These range from 0 up to 977 (i.e., they are zero-based). ;
% A line reading 'ng -1' refers to the ng-th landmark-gene, ;
% as listed in the file ;
% /data/rangan/dir_bcc/dir_CMAP/dir_reframe/clue_landmark_genes_20250822_tsv.txt ;
%%%%%%%%;
% In this file we only list the 197 perturbagens that are NEGATIVELY correlated with the sub-signature. ;
% These range from 0 up to 12781 (i.e., they are zero-based). ;
% A line reading '-1 np' refers to the np-th perturbagen, ;
% as listed in the file ;
% /data/rangan/dir_bcc/dir_CMAP/dir_reframe/filtered_modzs_signatures_24h_trtcp_A549_1uM.h5 ;
%%%%%%%%;
197 -1
791 -1
636 -1
634 -1
541 -1
536 -1
454 -1
254 -1
231 -1
93 -1
281 -1
416 -1
445 -1
548 -1
574 -1
702 -1
718 -1
831 -1
931 -1
143 -1
133 -1
102 -1
683 -1
859 -1
806 -1
639 -1
287 -1
45 -1
343 -1
754 -1
463 -1
837 -1
915 -1
739 -1
219 -1
435 -1
381 -1
306 -1
559 -1
316 -1
881 -1
631 -1
749 -1
924 -1
737 -1
491 -1
92 -1
301 -1
764 -1
147 -1
818 -1
327 -1
112 -1
808 -1
514 -1
930 -1
672 -1
91 -1
770 -1
609 -1
725 -1
790 -1
502 -1
962 -1
276 -1
339 -1
490 -1
267 -1
781 -1
592 -1
408 -1
128 -1
524 -1
895 -1
468 -1
127 -1
154 -1
235 -1
282 -1
846 -1
285 -1
148 -1
674 -1
570 -1
98 -1
740 -1
812 -1
902 -1
168 -1
872 -1
772 -1
61 -1
234 -1
397 -1
549 -1
255 -1
177 -1
624 -1
530 -1
336 -1
484 -1
562 -1
746 -1
795 -1
376 -1
651 -1
206 -1
932 -1
333 -1
272 -1
157 -1
66 -1
217 -1
359 -1
836 -1
525 -1
335 -1
495 -1
379 -1
706 -1
908 -1
923 -1
510 -1
328 -1
765 -1
203 -1
596 -1
867 -1
405 -1
162 -1
246 -1
449 -1
787 -1
358 -1
72 -1
794 -1
724 -1
797 -1
865 -1
117 -1
713 -1
29 -1
722 -1
817 -1
223 -1
747 -1
921 -1
68 -1
26 -1
113 -1
778 -1
619 -1
362 -1
386 -1
844 -1
350 -1
392 -1
288 -1
975 -1
972 -1
469 -1
292 -1
130 -1
244 -1
714 -1
664 -1
192 -1
658 -1
400 -1
871 -1
726 -1
110 -1
675 -1
901 -1
756 -1
783 -1
465 -1
32 -1
717 -1
185 -1
601 -1
396 -1
504 -1
855 -1
759 -1
743 -1
142 -1
943 -1
763 -1
182 -1
450 -1
299 -1
671 -1
253 -1
440 -1
612 -1
632 -1
555 -1
526 -1
100 -1
421 -1
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-1 1213
-1 3120
-1 9341
-1 3103
-1 204
-1 9389
-1 5199
-1 3026
-1 8757
-1 8696
-1 5235
-1 10237
-1 11477
-1 3734
-1 6964
-1 11383
-1 7229
-1 12341
-1 5169
-1 8520
-1 3139
-1 9406
-1 9154
-1 9404
-1 4366
-1 7048
-1 2975
-1 5296
-1 12405
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-1 8396
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-1 3133
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-1 7172
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-1 3554
-1 7187
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-1 8752
-1 140
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-1 8537
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-1 11494
-1 3116
-1 1195
-1 2459
-1 11160
-1 9153
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-1 2458
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-1 3096
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-1 11395
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-1 8219
-1 8597
-1 2905
-1 9192
-1 5299
-1 1130
-1 1028
-1 7193
-1 7070
-1 11099
-1 7057
-1 8616
-1 11474
-1 8595
-1 1093
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-1 7368
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-1 8614
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-1 8658
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-1 8798
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-1 8660
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-1 8796
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-1 2995
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-1 8733
-1 7087
-1 7362
-1 7156
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-1 2977
-1 7765
-1 8675
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-1 8579
-1 6479
-1 8533
-1 10921
-1 5326
-1 8618
-1 1518
-1 1281
-1 1719
-1 8212
-1 8268
-1 11476
-1 11686
-1 9008
-1 12229
-1 1439
-1 1278
-1 7668
-1 7426
-1 10178
-1 8737
-1 8677
-1 3078
-1 3028
-1 1191
-1 11920
-1 11849
-1 11436
-1 12481
-1 11358
-1 8972
-1 3034
-1 7080
-1 6536
-1 4209
-1 1268
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-1 9135
-1 12527
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-1 8322
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-1 1522
-1 5361
-1 8816
-1 8825
-1 7493
-1 10339
-1 1056
-1 8104
-1 5343
-1 5101
-1 12107
-1 3114
-1 10897
-1 1293
-1 9326
-1 10177
-1 10359
-1 11133
-1 1515
-1 9429
-1 10960