%%%%%%%%;
% This file lists the gene- and perturbagen-indices of;
% /data/rangan/dir_bcc/dir_CMAP/dir_reframe/filtered_modzs_signatures_24h_trtcp_A549_5uM.h5 ;
% in their order of importance, ;
% with the most important indices listed first (i.e., higher) in the file. ;
%%%%%%%%;
% First we list 145 of the gene-indices. ;
% These range from 0 up to 977 (i.e., they are zero-based). ;
% A line reading 'ng -1' refers to the ng-th landmark-gene, ;
% as listed in the file ;
% /data/rangan/dir_bcc/dir_CMAP/dir_reframe/clue_landmark_genes_20250822_tsv.txt ;
%%%%%%%%;
% In this file we only list the 266 perturbagens that are NEGATIVELY correlated with the sub-signature. ;
% These range from 0 up to 12351 (i.e., they are zero-based). ;
% A line reading '-1 np' refers to the np-th perturbagen, ;
% as listed in the file ;
% /data/rangan/dir_bcc/dir_CMAP/dir_reframe/filtered_modzs_signatures_24h_trtcp_A549_5uM.h5 ;
%%%%%%%%;
197 -1
791 -1
634 -1
454 -1
231 -1
133 -1
281 -1
416 -1
445 -1
718 -1
143 -1
502 -1
818 -1
764 -1
92 -1
491 -1
168 -1
301 -1
883 -1
631 -1
749 -1
490 -1
287 -1
343 -1
316 -1
915 -1
737 -1
339 -1
113 -1
619 -1
706 -1
154 -1
672 -1
837 -1
639 -1
674 -1
102 -1
435 -1
962 -1
739 -1
306 -1
781 -1
881 -1
923 -1
609 -1
405 -1
381 -1
559 -1
91 -1
147 -1
725 -1
808 -1
282 -1
806 -1
770 -1
790 -1
895 -1
235 -1
449 -1
219 -1
328 -1
592 -1
902 -1
865 -1
267 -1
408 -1
112 -1
128 -1
812 -1
683 -1
930 -1
549 -1
336 -1
859 -1
772 -1
255 -1
276 -1
148 -1
740 -1
468 -1
285 -1
234 -1
584 -1
61 -1
872 -1
397 -1
807 -1
624 -1
651 -1
206 -1
817 -1
746 -1
795 -1
66 -1
932 -1
177 -1
562 -1
765 -1
530 -1
359 -1
333 -1
157 -1
596 -1
484 -1
272 -1
162 -1
379 -1
26 -1
223 -1
747 -1
787 -1
713 -1
362 -1
72 -1
465 -1
794 -1
724 -1
358 -1
836 -1
217 -1
203 -1
525 -1
921 -1
831 -1
574 -1
524 -1
463 -1
901 -1
846 -1
514 -1
386 -1
469 -1
341 -1
254 -1
536 -1
142 -1
742 -1
376 -1
664 -1
855 -1
45 -1
702 -1
288 -1
548 -1
243 -1
-1 1314
-1 1886
-1 39
-1 9399
-1 173
-1 1352
-1 200
-1 164
-1 9533
-1 1875
-1 1488
-1 1334
-1 9455
-1 1546
-1 805
-1 1876
-1 9515
-1 1962
-1 706
-1 2044
-1 192
-1 688
-1 9475
-1 2173
-1 9520
-1 2116
-1 50
-1 2158
-1 172
-1 1906
-1 25
-1 3
-1 1944
-1 189
-1 44
-1 1277
-1 9438
-1 9534
-1 1926
-1 24
-1 289
-1 9410
-1 133
-1 1952
-1 1990
-1 1300
-1 5610
-1 161
-1 2174
-1 628
-1 150
-1 1915
-1 178
-1 9552
-1 28
-1 1882
-1 111
-1 42
-1 9413
-1 9452
-1 69
-1 18
-1 9646
-1 830
-1 37
-1 61
-1 1984
-1 1922
-1 630
-1 17
-1 1430
-1 827
-1 1909
-1 9509
-1 1890
-1 9383
-1 9476
-1 1414
-1 78
-1 54
-1 1881
-1 49
-1 1930
-1 162
-1 1464
-1 153
-1 9490
-1 1927
-1 1528
-1 58
-1 9535
-1 282
-1 1934
-1 9540
-1 1913
-1 70
-1 9652
-1 9580
-1 626
-1 2129
-1 2059
-1 1423
-1 9477
-1 686
-1 83
-1 1877
-1 1318
-1 1410
-1 52
-1 1912
-1 1275
-1 1898
-1 5344
-1 645
-1 23
-1 2176
-1 1408
-1 1918
-1 684
-1 31
-1 1301
-1 56
-1 9532
-1 5258
-1 279
-1 9471
-1 166
-1 57
-1 1983
-1 208
-1 9436
-1 9574
-1 148
-1 9456
-1 9511
-1 8
-1 1932
-1 1902
-1 9417
-1 1545
-1 134
-1 76
-1 66
-1 9364
-1 2005
-1 1332
-1 231
-1 1884
-1 259
-1 20
-1 88
-1 5360
-1 155
-1 1896
-1 75
-1 67
-1 1985
-1 2177
-1 5630
-1 193
-1 1895
-1 137
-1 866
-1 5236
-1 47
-1 147
-1 1917
-1 1916
-1 9512
-1 1949
-1 43
-1 10
-1 9527
-1 1417
-1 6200
-1 807
-1 9374
-1 1279
-1 38
-1 1256
-1 1432
-1 691
-1 1425
-1 1390
-1 1404
-1 5755
-1 1893
-1 1943
-1 5139
-1 5854
-1 104
-1 9348
-1 1354
-1 1900
-1 1961
-1 120
-1 171
-1 5832
-1 1986
-1 2
-1 2134
-1 2166
-1 1466
-1 2026
-1 1979
-1 1987
-1 2178
-1 1551
-1 9570
-1 1407
-1 1357
-1 1925
-1 9352
-1 5956
-1 9439
-1 1372
-1 1888
-1 1336
-1 10352
-1 1920
-1 9536
-1 9522
-1 1485
-1 21
-1 2160
-1 5889
-1 129
-1 126
-1 5254
-1 1360
-1 4
-1 9394
-1 9454
-1 9405
-1 272
-1 1281
-1 669
-1 2104
-1 672
-1 1319
-1 238
-1 1465
-1 2135
-1 9650
-1 19
-1 1939
-1 5627
-1 1267
-1 1259
-1 1947
-1 9559
-1 100
-1 9457
-1 9474
-1 649
-1 9517
-1 10374
-1 1391
-1 116
-1 152
-1 5085
-1 2142
-1 5631
-1 1260
-1 9423
-1 1353