%%%%%%%%;
% This file lists the gene- and perturbagen-indices of;
% /data/rangan/dir_bcc/dir_CMAP/dir_reframe/filtered_modzs_signatures_24h_trtcp_A549_1uM.h5 ;
% in their order of importance, ;
% with the most important indices listed first (i.e., higher) in the file. ;
%%%%%%%%;
% First we list 201 of the gene-indices. ;
% These range from 0 up to 977 (i.e., they are zero-based). ;
% A line reading 'ng -1' refers to the ng-th landmark-gene, ;
% as listed in the file ;
% /data/rangan/dir_bcc/dir_CMAP/dir_reframe/clue_landmark_genes_20250822_tsv.txt ;
%%%%%%%%;
% In this file we only list the 345 perturbagens that are NEGATIVELY correlated with the sub-signature. ;
% These range from 0 up to 12781 (i.e., they are zero-based). ;
% A line reading '-1 np' refers to the np-th perturbagen, ;
% as listed in the file ;
% /data/rangan/dir_bcc/dir_CMAP/dir_reframe/filtered_modzs_signatures_24h_trtcp_A549_1uM.h5 ;
%%%%%%%%;
102 -1
536 -1
234 -1
231 -1
157 -1
45 -1
281 -1
339 -1
468 -1
702 -1
718 -1
831 -1
902 -1
931 -1
306 -1
818 -1
491 -1
168 -1
301 -1
254 -1
91 -1
559 -1
287 -1
764 -1
737 -1
327 -1
881 -1
362 -1
133 -1
806 -1
781 -1
924 -1
837 -1
592 -1
609 -1
276 -1
316 -1
112 -1
639 -1
463 -1
26 -1
343 -1
962 -1
408 -1
435 -1
808 -1
154 -1
739 -1
502 -1
672 -1
790 -1
490 -1
514 -1
915 -1
631 -1
725 -1
749 -1
770 -1
930 -1
61 -1
454 -1
223 -1
128 -1
524 -1
674 -1
530 -1
923 -1
98 -1
219 -1
336 -1
740 -1
206 -1
859 -1
812 -1
895 -1
872 -1
787 -1
148 -1
285 -1
143 -1
177 -1
624 -1
746 -1
127 -1
795 -1
72 -1
376 -1
235 -1
255 -1
397 -1
562 -1
335 -1
333 -1
525 -1
772 -1
651 -1
484 -1
272 -1
724 -1
359 -1
217 -1
794 -1
379 -1
713 -1
197 -1
147 -1
381 -1
282 -1
358 -1
932 -1
92 -1
683 -1
549 -1
66 -1
267 -1
836 -1
706 -1
754 -1
908 -1
664 -1
596 -1
765 -1
203 -1
570 -1
510 -1
619 -1
495 -1
797 -1
791 -1
747 -1
328 -1
405 -1
246 -1
445 -1
162 -1
867 -1
865 -1
416 -1
846 -1
117 -1
29 -1
541 -1
449 -1
722 -1
465 -1
574 -1
817 -1
469 -1
113 -1
68 -1
844 -1
288 -1
392 -1
548 -1
350 -1
636 -1
778 -1
130 -1
921 -1
972 -1
192 -1
975 -1
632 -1
244 -1
714 -1
901 -1
658 -1
726 -1
634 -1
783 -1
292 -1
386 -1
110 -1
871 -1
855 -1
504 -1
400 -1
32 -1
717 -1
185 -1
396 -1
299 -1
743 -1
671 -1
142 -1
943 -1
763 -1
182 -1
160 -1
601 -1
440 -1
759 -1
675 -1
756 -1
253 -1
473 -1
526 -1
100 -1
93 -1
555 -1
914 -1
-1 5253
-1 5195
-1 6494
-1 7819
-1 3079
-1 7066
-1 4657
-1 6477
-1 7062
-1 7125
-1 11475
-1 7745
-1 10341
-1 5204
-1 1152
-1 12345
-1 8757
-1 7808
-1 3103
-1 11624
-1 3074
-1 7212
-1 6566
-1 7081
-1 11602
-1 7094
-1 1106
-1 7048
-1 7341
-1 11519
-1 3142
-1 6556
-1 5300
-1 3076
-1 12341
-1 7229
-1 11640
-1 7195
-1 11592
-1 3090
-1 12527
-1 6453
-1 6495
-1 7814
-1 7007
-1 12364
-1 3139
-1 5146
-1 12405
-1 8520
-1 7138
-1 3113
-1 7630
-1 7186
-1 7080
-1 9154
-1 12223
-1 7769
-1 1099
-1 5296
-1 12402
-1 3102
-1 10323
-1 12229
-1 7679
-1 11477
-1 7719
-1 7050
-1 1079
-1 1151
-1 8212
-1 11535
-1 11573
-1 11527
-1 6536
-1 8600
-1 11291
-1 8521
-1 8676
-1 11454
-1 11600
-1 5305
-1 2969
-1 2975
-1 11561
-1 1157
-1 11599
-1 7180
-1 7706
-1 11459
-1 11654
-1 8621
-1 7663
-1 3042
-1 11598
-1 9028
-1 8655
-1 4264
-1 7461
-1 140
-1 1195
-1 8815
-1 11440
-1 1093
-1 5334
-1 11466
-1 2982
-1 1268
-1 2036
-1 9404
-1 7172
-1 1028
-1 8679
-1 8294
-1 11649
-1 3096
-1 11562
-1 11494
-1 8559
-1 11524
-1 7493
-1 1146
-1 8752
-1 11588
-1 3082
-1 11174
-1 3116
-1 8219
-1 11507
-1 3094
-1 9192
-1 8695
-1 1027
-1 9153
-1 3027
-1 7681
-1 3037
-1 7386
-1 7208
-1 8697
-1 6437
-1 2011
-1 7193
-1 8638
-1 3092
-1 8558
-1 1129
-1 1049
-1 8250
-1 8615
-1 7057
-1 11474
-1 1113
-1 7836
-1 1193
-1 8796
-1 11395
-1 2905
-1 11099
-1 8714
-1 8620
-1 8595
-1 4671
-1 8795
-1 5167
-1 7127
-1 8616
-1 7797
-1 8614
-1 11560
-1 2995
-1 6978
-1 8717
-1 7049
-1 11576
-1 3034
-1 10325
-1 8515
-1 6958
-1 11473
-1 6520
-1 11457
-1 8598
-1 8637
-1 8535
-1 7156
-1 8582
-1 7036
-1 7087
-1 8733
-1 12411
-1 8596
-1 8580
-1 8675
-1 7362
-1 8517
-1 7809
-1 2977
-1 7765
-1 8814
-1 11554
-1 6479
-1 6434
-1 6468
-1 11610
-1 7010
-1 5201
-1 8618
-1 7128
-1 9007
-1 1281
-1 8268
-1 11476
-1 7407
-1 7695
-1 5099
-1 5143
-1 11373
-1 6558
-1 5148
-1 7166
-1 11920
-1 11849
-1 7340
-1 5326
-1 10229
-1 3028
-1 8825
-1 8677
-1 10178
-1 1518
-1 6459
-1 11505
-1 12500
-1 11358
-1 8798
-1 5233
-1 8857
-1 5278
-1 5109
-1 1439
-1 5132
-1 1969
-1 5364
-1 7129
-1 2016
-1 12441
-1 1293
-1 5101
-1 11663
-1 1278
-1 1304
-1 5360
-1 5288
-1 11418
-1 8823
-1 5251
-1 9008
-1 8961
-1 1450
-1 5169
-1 1406
-1 11443
-1 7708
-1 5231
-1 11385
-1 5088
-1 11359
-1 5079
-1 11412
-1 5234
-1 5352
-1 5298
-1 2069
-1 5353
-1 11372
-1 8982
-1 7821
-1 1515
-1 11133
-1 5131
-1 11111
-1 11363
-1 5139
-1 5091
-1 5122
-1 1444
-1 11537
-1 7603
-1 7109
-1 7348
-1 11424
-1 11386
-1 11439
-1 11357
-1 6577
-1 7580
-1 1282
-1 3114
-1 11608
-1 8867
-1 1490
-1 11626
-1 4582
-1 11366
-1 11533
-1 11423
-1 10158
-1 1361
-1 1491
-1 5302
-1 6335
-1 11638
-1 5356
-1 9027
-1 7676
-1 3024
-1 11388
-1 5241
-1 1280
-1 5117
-1 2168
-1 8989
-1 1341
-1 11517
-1 1523
-1 1432
-1 3001
-1 5246
-1 10960
-1 9036
-1 5068
-1 11384
-1 1513
-1 5081
-1 8994
-1 7863
-1 11510
-1 11653
-1 3005
-1 10979
-1 10853
-1 3665
-1 11536
-1 9010