%%%%%%%%;
% This file lists the gene- and perturbagen-indices of;
% /data/rangan/dir_bcc/dir_CMAP/dir_reframe/filtered_modzs_signatures_24h_trtcp_A549_1uM.h5 ;
% in their order of importance, ;
% with the most important indices listed first (i.e., higher) in the file. ;
%%%%%%%%;
% First we list 116 of the gene-indices. ;
% These range from 0 up to 977 (i.e., they are zero-based). ;
% A line reading 'ng -1' refers to the ng-th landmark-gene, ;
% as listed in the file ;
% /data/rangan/dir_bcc/dir_CMAP/dir_reframe/clue_landmark_genes_20250822_tsv.txt ;
%%%%%%%%;
% In this file we only list the 168 perturbagens that are POSITIVELY correlated with the sub-signature. ;
% These range from 0 up to 12781 (i.e., they are zero-based). ;
% A line reading '-1 np' refers to the np-th perturbagen, ;
% as listed in the file ;
% /data/rangan/dir_bcc/dir_CMAP/dir_reframe/filtered_modzs_signatures_24h_trtcp_A549_1uM.h5 ;
%%%%%%%%;
206 -1
791 -1
397 -1
272 -1
254 -1
246 -1
231 -1
29 -1
276 -1
281 -1
339 -1
416 -1
435 -1
445 -1
449 -1
468 -1
530 -1
570 -1
574 -1
702 -1
765 -1
795 -1
806 -1
831 -1
930 -1
133 -1
112 -1
93 -1
463 -1
316 -1
754 -1
343 -1
45 -1
683 -1
102 -1
881 -1
327 -1
639 -1
287 -1
92 -1
837 -1
559 -1
962 -1
491 -1
924 -1
737 -1
592 -1
408 -1
147 -1
764 -1
770 -1
223 -1
915 -1
502 -1
91 -1
128 -1
808 -1
790 -1
219 -1
514 -1
781 -1
235 -1
282 -1
26 -1
739 -1
454 -1
672 -1
740 -1
381 -1
490 -1
749 -1
148 -1
267 -1
895 -1
524 -1
859 -1
609 -1
127 -1
549 -1
61 -1
234 -1
285 -1
674 -1
154 -1
562 -1
255 -1
98 -1
902 -1
484 -1
713 -1
651 -1
787 -1
624 -1
143 -1
746 -1
301 -1
376 -1
379 -1
336 -1
177 -1
335 -1
358 -1
333 -1
536 -1
724 -1
872 -1
157 -1
596 -1
359 -1
794 -1
931 -1
197 -1
217 -1
836 -1
525 -1
66 -1
-1 1281
-1 9007
-1 8757
-1 8696
-1 5345
-1 5169
-1 11360
-1 8581
-1 8599
-1 8621
-1 8520
-1 8815
-1 8594
-1 8655
-1 5112
-1 8811
-1 8813
-1 8521
-1 8678
-1 11389
-1 8752
-1 8808
-1 8560
-1 8716
-1 8777
-1 8557
-1 8522
-1 8676
-1 8679
-1 8555
-1 8694
-1 8600
-1 8559
-1 8695
-1 8773
-1 8775
-1 8797
-1 8562
-1 5129
-1 8714
-1 11395
-1 8597
-1 8537
-1 8636
-1 8697
-1 8617
-1 8640
-1 8519
-1 8656
-1 8754
-1 8738
-1 8774
-1 8638
-1 8558
-1 8539
-1 8792
-1 8736
-1 8595
-1 8619
-1 8534
-1 8620
-1 8793
-1 8601
-1 8576
-1 8658
-1 8535
-1 8791
-1 8538
-1 8614
-1 8639
-1 8713
-1 8794
-1 8615
-1 8810
-1 8616
-1 1276
-1 8660
-1 8657
-1 8698
-1 8796
-1 8515
-1 8734
-1 8556
-1 8715
-1 8635
-1 8598
-1 8733
-1 8582
-1 8637
-1 8596
-1 8812
-1 8751
-1 8735
-1 8675
-1 8579
-1 8580
-1 8517
-1 8518
-1 8814
-1 8533
-1 8540
-1 8618
-1 1436
-1 5071
-1 8718
-1 8825
-1 5364
-1 8699
-1 3028
-1 8737
-1 8677
-1 8541
-1 8561
-1 8578
-1 11358
-1 8798
-1 4354
-1 7062
-1 11465
-1 1843
-1 7706
-1 11400
-1 3674
-1 8717
-1 8795
-1 1268
-1 5099
-1 8817
-1 9008
-1 5132
-1 1278
-1 1304
-1 8857
-1 5100
-1 11373
-1 8772
-1 1087
-1 5109
-1 5122
-1 11568
-1 11614
-1 11443
-1 1293
-1 5363
-1 1419
-1 5353
-1 5259
-1 5361
-1 5360
-1 11516
-1 8816
-1 8961
-1 5110
-1 5101
-1 5079
-1 8516
-1 1450
-1 5088
-1 5231
-1 11376
-1 8968
-1 1493
-1 8823
-1 11418
-1 11425
-1 5131
-1 11385
-1 5352