%%%%%%%%;
% This file lists the gene- and perturbagen-indices of;
% /data/rangan/dir_bcc/dir_CMAP/dir_reframe/filtered_modzs_signatures_24h_trtcp_A549_1uM.h5 ;
% in their order of importance, ;
% with the most important indices listed first (i.e., higher) in the file. ;
%%%%%%%%;
% First we list 224 of the gene-indices. ;
% These range from 0 up to 977 (i.e., they are zero-based). ;
% A line reading 'ng -1' refers to the ng-th landmark-gene, ;
% as listed in the file ;
% /data/rangan/dir_bcc/dir_CMAP/dir_reframe/clue_landmark_genes_20250822_tsv.txt ;
%%%%%%%%;
% In this file we only list the 229 perturbagens that are POSITIVELY correlated with the sub-signature. ;
% These range from 0 up to 12781 (i.e., they are zero-based). ;
% A line reading '-1 np' refers to the np-th perturbagen, ;
% as listed in the file ;
% /data/rangan/dir_bcc/dir_CMAP/dir_reframe/filtered_modzs_signatures_24h_trtcp_A549_1uM.h5 ;
%%%%%%%%;
35 -1
953 -1
946 -1
845 -1
840 -1
798 -1
791 -1
717 -1
675 -1
611 -1
569 -1
482 -1
397 -1
352 -1
280 -1
272 -1
261 -1
254 -1
253 -1
246 -1
239 -1
231 -1
206 -1
166 -1
95 -1
29 -1
276 -1
281 -1
292 -1
339 -1
344 -1
416 -1
435 -1
440 -1
445 -1
449 -1
468 -1
526 -1
530 -1
570 -1
574 -1
647 -1
665 -1
142 -1
702 -1
726 -1
133 -1
765 -1
795 -1
112 -1
806 -1
831 -1
930 -1
93 -1
936 -1
195 -1
372 -1
903 -1
430 -1
210 -1
767 -1
888 -1
578 -1
240 -1
476 -1
742 -1
494 -1
782 -1
815 -1
613 -1
591 -1
971 -1
94 -1
728 -1
275 -1
546 -1
486 -1
103 -1
347 -1
78 -1
97 -1
853 -1
196 -1
821 -1
929 -1
380 -1
669 -1
859 -1
559 -1
737 -1
287 -1
683 -1
223 -1
639 -1
45 -1
219 -1
102 -1
147 -1
837 -1
235 -1
343 -1
148 -1
770 -1
739 -1
808 -1
915 -1
790 -1
381 -1
92 -1
881 -1
61 -1
895 -1
549 -1
491 -1
490 -1
781 -1
255 -1
234 -1
609 -1
301 -1
962 -1
743 -1
674 -1
749 -1
651 -1
454 -1
154 -1
740 -1
672 -1
405 -1
282 -1
787 -1
924 -1
336 -1
724 -1
267 -1
128 -1
747 -1
865 -1
157 -1
26 -1
592 -1
463 -1
127 -1
624 -1
91 -1
408 -1
379 -1
316 -1
902 -1
143 -1
288 -1
562 -1
524 -1
764 -1
713 -1
358 -1
350 -1
335 -1
510 -1
177 -1
921 -1
514 -1
836 -1
327 -1
113 -1
619 -1
794 -1
66 -1
203 -1
846 -1
502 -1
197 -1
722 -1
484 -1
376 -1
754 -1
217 -1
867 -1
901 -1
972 -1
504 -1
718 -1
548 -1
908 -1
536 -1
117 -1
746 -1
541 -1
807 -1
162 -1
872 -1
98 -1
392 -1
855 -1
130 -1
714 -1
192 -1
943 -1
525 -1
285 -1
756 -1
706 -1
933 -1
975 -1
778 -1
450 -1
7 -1
817 -1
497 -1
473 -1
766 -1
328 -1
400 -1
783 -1
396 -1
333 -1
110 -1
658 -1
171 -1
844 -1
185 -1
601 -1
359 -1
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-1 8773
-1 8522
-1 8694
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-1 8519
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-1 1419
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-1 8797
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-1 8533
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-1 8817
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-1 8793
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-1 8757
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-1 11361
-1 5363
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-1 8933
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-1 5231
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-1 5340
-1 1404
-1 3152