%%%%%%%%;
% This file lists the gene- and perturbagen-indices of;
% /data/rangan/dir_bcc/dir_CMAP/dir_reframe/filtered_modzs_signatures_24h_trtcp_A549_1uM.h5 ;
% in their order of importance, ;
% with the most important indices listed first (i.e., higher) in the file. ;
%%%%%%%%;
% First we list 38 of the gene-indices. ;
% These range from 0 up to 977 (i.e., they are zero-based). ;
% A line reading 'ng -1' refers to the ng-th landmark-gene, ;
% as listed in the file ;
% /data/rangan/dir_bcc/dir_CMAP/dir_reframe/clue_landmark_genes_20250822_tsv.txt ;
%%%%%%%%;
% In this file we only list the 268 perturbagens that are POSITIVELY correlated with the sub-signature. ;
% These range from 0 up to 12781 (i.e., they are zero-based). ;
% A line reading '-1 np' refers to the np-th perturbagen, ;
% as listed in the file ;
% /data/rangan/dir_bcc/dir_CMAP/dir_reframe/filtered_modzs_signatures_24h_trtcp_A549_1uM.h5 ;
%%%%%%%%;
184 -1
791 -1
778 -1
742 -1
634 -1
600 -1
400 -1
397 -1
352 -1
317 -1
298 -1
254 -1
246 -1
231 -1
93 -1
276 -1
281 -1
292 -1
339 -1
344 -1
416 -1
445 -1
449 -1
468 -1
526 -1
574 -1
592 -1
665 -1
726 -1
756 -1
765 -1
806 -1
831 -1
855 -1
860 -1
867 -1
895 -1
130 -1
-1 5109
-1 8757
-1 5071
-1 8696
-1 9007
-1 8599
-1 11360
-1 8581
-1 8655
-1 8621
-1 8522
-1 8520
-1 8811
-1 8594
-1 8638
-1 8813
-1 8694
-1 8775
-1 8808
-1 8815
-1 8676
-1 8718
-1 8560
-1 8555
-1 8619
-1 8519
-1 8797
-1 8600
-1 8618
-1 8678
-1 8561
-1 8825
-1 8521
-1 8557
-1 8559
-1 11389
-1 8773
-1 8562
-1 8791
-1 8752
-1 8716
-1 8640
-1 8679
-1 8774
-1 8697
-1 8597
-1 8539
-1 8695
-1 8714
-1 8615
-1 8636
-1 5353
-1 8537
-1 8617
-1 8595
-1 8656
-1 8620
-1 8614
-1 8796
-1 8538
-1 8616
-1 8699
-1 8754
-1 8558
-1 8810
-1 8534
-1 8777
-1 8792
-1 8736
-1 8556
-1 8576
-1 8794
-1 8713
-1 8738
-1 8535
-1 8601
-1 8639
-1 5129
-1 8578
-1 8515
-1 8715
-1 8793
-1 8698
-1 8660
-1 8734
-1 8657
-1 8658
-1 8637
-1 8812
-1 8598
-1 8582
-1 8518
-1 8596
-1 8580
-1 8751
-1 8733
-1 8635
-1 8735
-1 8675
-1 8579
-1 8517
-1 8533
-1 8814
-1 8540
-1 8817
-1 5088
-1 11655
-1 8798
-1 8737
-1 8677
-1 7859
-1 11525
-1 8551
-1 8541
-1 5363
-1 8816
-1 1276
-1 5112
-1 8717
-1 5345
-1 11418
-1 11366
-1 1281
-1 5360
-1 9001
-1 8867
-1 5352
-1 8516
-1 3028
-1 8795
-1 1444
-1 11638
-1 5100
-1 7603
-1 5079
-1 5067
-1 11632
-1 1419
-1 5169
-1 1282
-1 5139
-1 5110
-1 11359
-1 11358
-1 1436
-1 5132
-1 5099
-1 5101
-1 5364
-1 11443
-1 5122
-1 5152
-1 5361
-1 11376
-1 11533
-1 11537
-1 11386
-1 1293
-1 9008
-1 5143
-1 11424
-1 5251
-1 1329
-1 8982
-1 11510
-1 2846
-1 5081
-1 1316
-1 11384
-1 11373
-1 9119
-1 11658
-1 11378
-1 8772
-1 8823
-1 8857
-1 11532
-1 11352
-1 11439
-1 11395
-1 11614
-1 11628
-1 5117
-1 9028
-1 5356
-1 3665
-1 11369
-1 5068
-1 5142
-1 8968
-1 11363
-1 1493
-1 1361
-1 8801
-1 9116
-1 5078
-1 11423
-1 1432
-1 11403
-1 1304
-1 11406
-1 11388
-1 1450
-1 8881
-1 5131
-1 1278
-1 11372
-1 5098
-1 11451
-1 9027
-1 11517
-1 11514
-1 11398
-1 5231
-1 11385
-1 11357
-1 5091
-1 11394
-1 11425
-1 1333
-1 11516
-1 11557
-1 1268
-1 11342
-1 11063
-1 1339
-1 5108
-1 3024
-1 5092
-1 8929
-1 3009
-1 8989
-1 7863
-1 3005
-1 11412
-1 8961
-1 5126
-1 2877
-1 1481
-1 2870
-1 5057
-1 3004
-1 11555
-1 11616
-1 7758
-1 11652
-1 5069
-1 7646
-1 5123
-1 11653
-1 5212
-1 1294
-1 9010
-1 11529
-1 3043
-1 5340
-1 11553
-1 3125
-1 11404
-1 11362
-1 5111
-1 5331
-1 1452
-1 11419
-1 11543
-1 1284
-1 5085
-1 1513